Find Global Modularity (Q) — compute.Modularity • metanetwork

This function finds Function to find global modularity (Q) of a upper triangular adjacency matrix.

Usage

# S3 method for Modularity
compute(adj, mod, method = "Newman1")

Arguments

adj: Required. An n x n upper triangular adjacency in the matrix class format.
mod: Required. An n x 3 dimensional data frame with column names as Gene.ID, moduleNumber, and moduleLabel.
method: Optional. If 'Newman1' is specified modularity is instituded in as-per the Clauset, Newman model in the function igraph::graph.modularity() (Default = 'Newman1')

Value

Q = modularity index.