Covariance based on Neighborhood Selection

This function defines the covariance neighborhood between gene-gene edges in an expression matrix.

Usage

covarianceSelectionMBPath(X, rankedEdges, numberObservations, startI = 1)

Arguments

X

Required. An expression matrix

rankedEdges

Required. An edge list in the form of a matrix where column one is gene one and column 2 is gene two

numberObservations

Required. The number of samples comprising the network (?)

startI

Optional. Start at the first edge in `rankedEdges` (Default = 1)

Value

A list object of containing the BIC estimate, bicNeighborhood (?) , neighborhoods (?), flag (?)