This function tries to get modules from network adjacency matrix using Link communities algorithm.

This function tries to get modules from network adjacency matrix using Link communities algorithm.

Usage

findModules.CFinder.once(adj, path, min.module.size, i)

Arguments

adj

A n x n upper triangular adjacency in the matrix class format.

path

File path location of CFinder.

min.module.size

Optional. Integer between 1 and n genes. (Default = 30)

i

Required. Character name of temp file name to generate.

Value

GeneModules = n x 3 dimensional data frame with column names as Gene.ID, moduleNumber, and moduleLabel.