This function to get modules from network adjacency matrix using GANXiS
community detection algorithm v3.0.2.
Usage
findModules.GANXiS(adj, path, nperm = 10, min.module.size = 30)
Arguments
- adj
A n x n upper triangular adjacency in the matrix class format.
- path
File path location of CFinder.
- nperm
Optional. Number of permutation on the gene ordering. (Default = 10)
- min.module.size
Optional. Integer between 1 and n genes. (Default = 30)
Value
GeneModules = n x 3 dimensional data frame with column names as Gene.ID,
moduleNumber, and moduleLabel.