Wraps Finding Modules with Graph Adjacency

Deploys `igraph::graph.adjacency` iterativly to find module structure.

Usage

findModules.label_prop(adj, nperm = 10, min.module.size = 30)

Arguments

adj

A n x n upper triangular adjacency in the matrix class format.

nperm

Optional. Number of permutation on the gene ordering. (Default = 10)

min.module.size

Optional. Integer between 1 and n genes. (Default = 30)

Value

GeneModules = n x 3 dimensional data frame with column names as Gene.ID, moduleNumber, and moduleLabel.