Runs WGCNA::pickSoftThreshold over a gene expression matrix.
Usage
wgcnaSoftThreshold(
data,
path = NULL,
pval = 1,
outputpath,
RsquaredCut = 0.8,
defaultNaPower = 6
)Arguments
- data
Required. Gene expression data in a matrix or data frame. Rows correspond to samples and columns to genes.
- path
Optional. Not utilized in this function. (Default = NULL)
- pval
Optional. Not utilized in this function. (Default = 1)
- outputpath
Required. The file path to write the resulting coexpression network.
- RsquaredCut
Optional. Desired minimum scale free topology fitting index R^2. (Default = 0.80)
- defaultNaPower
Optional. The power to rais the abs(cor(data)) matrix to if thee power estimate from WGCNA::pickSoftThreshold() is too low (Default = 6).