Consortium to Public

bin.consortium_to_public

Attributes

logger = logging.getLogger(__name__) module-attribute

PWD = os.path.dirname(os.path.abspath(__file__)) module-attribute

parser = argparse.ArgumentParser() module-attribute

args = parser.parse_args() module-attribute

Functions

generate_dashboard_html(genie_version, staging=False, testing=False)

Generates dashboard html writeout that gets uploaded to the release folder

PARAMETER	DESCRIPTION
genie_version	GENIE release TYPE: str
staging	Use staging files. Default is False TYPE: bool DEFAULT: False
testing	Use testing files. Default is False TYPE: bool DEFAULT: False

generate_data_guide(genie_version, oncotree_version=None, database_mapping=None)

Generates the GENIE data guide

main(args)