Check for complete columns

Source: R/check-cols-complete.R

Check for complete columns in the data and fail (or warn) if incomplete. Missing columns that are required to be complete are ignored.

check_cols_complete(
  data,
  required_cols,
  empty_values = c(NA, ""),
  strict = TRUE,
  success_msg = "There is no missing data in columns that are required to be complete",
  fail_msg = "There is missing data in some columns that are required to be complete"
)

Arguments

data

Data to check
required_cols

A character vector of the required columns to check for completeness.
empty_values

Values that are considered empty. Defaults to NA and "".
strict

If FALSE, return a "check_warn" object; if TRUE, return a "check_fail" object
success_msg

Message indicating the check succeeded.
fail_msg

Message indicating the check failed.

Value

A condition object indicating whether the data contains columns that are not complete.

Examples

dat <- data.frame(specimenID = c("x", "y"), organ = c(NA, NA))
check_cols_complete(dat, c("specimenID", "organ"))

#> <error/check_fail>
#> There is missing data in some columns that are required to be complete