Provenance helper

Collapse Synapse Ids and version.

provenance_helper(
  metadata_id,
  counts_id,
  metadata_version = NULL,
  counts_version = NULL,
  biomart_id = NULL,
  biomart_version = NULL
)

Arguments

metadata_id

Synapse ID to clean metadata file with sample identifiers in a column and variables of interest as column names. There cannot be any missing values.

counts_id

Synapse ID to counts data frame with identifiers to the metadata as column names and gene ids in a column.

metadata_version

Optionally, include Synapse file version number. If omitted, current version will be downloaded.

counts_version

Optionally, include Synapse file version number.

biomart_id

Synapse ID to biomart object.

biomart_version

Optionally, include Synapse file version number.