All functions

add_section_variables()

Add unanswered questions within a section.

append_clinical_to_submission()

Append clinical multiplier to submissions

append_exp_nums()

Append experiment numbers to step name

calculate_denominator()

Calculate denominator

calculate_scores_rowwise()

Calculate scores rowwise

calculate_section_score()

Calculate the score for a section

calculate_submission_score()

Score an entire submission

change_logical_responses()

Change logical responses

combine_route_responses()

Combine multiple routes into one comma-separated response

create_section_table()

Create table for a section

create_table_from_json_file()

Create table from JSON file

create_values_table()

Create a tibble from the values within section

geom_mean_score()

Calculate geometric mean of non-zero scores

get_sections()

Get submission sections

get_submission_list()

Get list of submissions with ids

get_submissions()

Get the submissions based on status

lookup_table

Lookup table of section and question names

map_names()

Append user-friendly section and variable names

partial_betas

Partial beta weights of certain variables

process_submissions()

Process submissions

pull_reviews_table()

Pull latest review table Pull latest review table from Synapse and calculate weighted scores based on the reviewers' scores, clinical/preclinical modifiers, partial beta weights, species, etc.

run_app()

Run the Shiny Application

therapeutic_approach_response()

Rename response "both" to "prophylactic, symptomatic" in therapeutic approach